How can I prevent losing changes/having to add back resources following a Git pull in Xamarin Studio

Every time I do a Git pull and receive my friends changes Xamarin Studio does not pick up any new added files and most of the changes in the files. I have tried cleaning, rebuilding, and nothing works. I have to usually resort to adding all the files manually back to the project so the resources update. Is anyone having these issues or know how to resolve them? Thank you!

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